PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN24997.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 726aa    MW: 80062.1 Da    PI: 5.3704
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN24997.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.41e-21573670296
                 EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
          B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                 +kvl++sdv+++gr+vlpkk ae+h  +++ + ++ +t+ed  ++r+W+++++y  ++ks++y+l+ ++ +Fv+angL+egDf+v++  ++ +++++++
  KHN24997.1 573 QKVLKQSDVGSLGRIVLPKKEAETHlpELEARDGISITMEDiGTSRVWNMRYRYwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIY--SDvKCGKYMI 668
                 79*************************999999********7778*********777777777777.********************..5669998887 PP

                 EE CS
          B3  95 kv 96 
                 + 
  KHN24997.1 669 RG 670
                 65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-29567680IPR015300DNA-binding pseudobarrel domain
CDDcd100151.42E-36570671No hitNo description
SuperFamilySSF1019369.02E-24571667IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.138572674IPR003340B3 DNA binding domain
SMARTSM010192.1E-22572674IPR003340B3 DNA binding domain
PfamPF023624.2E-18573669IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MECEVELQGG DLHAGEVTDP NPIGFGNMED EHTLAVAERE MWLNSDQDEF LGVNDASMFY  60
ADFPPLPDFP CMSSSSSSSS ATPLPVKTMT CSTTTTTSSS SSSSSWAMLK SDAEEDAEKN  120
HCNRYMHDQL DATLSSTASM EISQQQNPDP GLGGTVGECM DDVMDTFGYM ELLEANDFFD  180
PASIFQNEGN ENPLEEFGTL EEHVPFHEEQ HAMVHHQQGQ AEEEDHQVPF CEEIQGDEEG  240
GDGVGVDDEM SNVFLEWLKS NKDSVSANDL RNVKLKKATL ESAARRLGGG KEAMKQLLKL  300
ILEWVQTSHL QNKRRKENNG SSISSVLQAQ FQDPSGQNNN QNTQSGSFAP ESNTCFNNQT  360
PWLSSQTFAT DQAPLMVPPQ QFPQPMVGYV GDPYTSGAAS NNISATHNHN NSNPYQPGAE  420
QYHMLESAHS WPHSLFNVAS NYSQSFGDNN GLNPHGGFGG GGYGNNQYPY QFFHGPGDRL  480
MRLGPSATKE ARKKRMARQR RFLSHHRHHS GNHQNQGSDP HARMGGDNCN TALAAPHHAN  540
PSANWMYWQA MIGGAADTEL GWKPEKNLRF LLQKVLKQSD VGSLGRIVLP KKEAETHLPE  600
LEARDGISIT MEDIGTSRVW NMRYRYWPNN KSRMYLLENT GDFVRANGLQ EGDFIVIYSD  660
VKCGKYMIRG VKVRQQGVKP ETKKAGKSQK NQHGTGTNAS STAGTAANNG TSSSPKTKSE  720
KSSKLI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1644270.0AB164427.1 Psophocarpus tetragonolobus wbABI3 mRNA for ABI-3 homolog, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532309.10.0PREDICTED: B3 domain-containing transcription factor ABI3-like isoform X2
SwissprotQ015931e-156ABI3_ARATH; B3 domain-containing transcription factor ABI3
TrEMBLA0A0B2QZA60.0A0A0B2QZA6_GLYSO; B3 domain-containing transcription factor ABI3
STRINGGLYMA08G47240.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94483037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.13e-89B3 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]